jwb@FreeBSD.org ( 12 )
| Port | Conflict with | Files |
|---|---|---|
| biology/bamutil |
devel/bam |
/usr/local/bin/bam |
| biology/bolt-lmm |
sysutils/rubygem-bolt |
/usr/local/bin/bolt |
| biology/fastx-toolkit |
devel/autoconf-archive |
/usr/local/share/aclocal/ax_c_long_long.m4 /usr/local/share/aclocal/ax_cxx_compile_stdcxx_11.m4 /usr/local/share/aclocal/ax_cxx_header_stdcxx_tr1.m4 |
| biology/gffread |
biology/cufflinks |
/usr/local/bin/gffread |
| biology/gmap |
misc/cpuid cad/scotch |
/usr/local/bin/cpuid /usr/local/bin/gmap |
| biology/ncbi-blast+ |
biology/ncbi-cxx-toolkit |
4154 files
/usr/local/bin/blast_formatter
/usr/local/bin/blast_report /usr/local/bin/blastdb_aliastool /usr/local/bin/blastdb_convert /usr/local/bin/blastdb_path /usr/local/bin/blastdbcheck /usr/local/bin/blastdbcmd /usr/local/bin/blastdbcp /usr/local/bin/blastn /usr/local/bin/blastp /usr/local/bin/blastx /usr/local/bin/cleanup-blastdb-volumes.py /usr/local/bin/convert2blastmask /usr/local/bin/datatool /usr/local/bin/deltablast /usr/local/bin/dustmasker /usr/local/bin/gene_info_reader /usr/local/bin/get_species_taxids.sh /usr/local/bin/legacy_blast.pl /usr/local/bin/lmdbxx_sample /usr/local/bin/makeblastdb /usr/local/bin/makembindex /usr/local/bin/makeprofiledb /usr/local/bin/project_tree_builder /usr/local/bin/psiblast /usr/local/bin/rpsblast /usr/local/bin/rpstblastn /usr/local/bin/run_with_lock /usr/local/bin/seedtop /usr/local/bin/segmasker /usr/local/bin/seqdb_demo /usr/local/bin/seqdb_perf /usr/local/bin/tblastn /usr/local/bin/tblastx /usr/local/bin/update_blastdb.pl /usr/local/bin/windowmasker /usr/local/bin/windowmasker_2.2.22_adapter.py /usr/local/include/ncbi-tools++/algo/blast/api/bl2seq.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_aux.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_exception.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_node.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_options.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_results.hpp /usr/local/include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp ... |
| biology/ncbi-entrez-direct |
textproc/ebook-tools textproc/p5-XML-Compile |
/usr/local/bin/einfo /usr/local/bin/xml2json |
| biology/picard-tools |
audio/picard |
/usr/local/bin/picard |
| biology/sra-tools |
net/kget |
/usr/local/bin/kget |
| biology/vcflib |
devel/libdisorder sysutils/filevercmp science/dakota |
/usr/local/include/disorder.h /usr/local/include/filevercmp.h /usr/local/include/pdflib.hpp /usr/local/include/rnglib.hpp |
| devel/libxtend |
devel/publib |
/usr/local/man/man3/strsplit.3.gz /usr/local/man/man3/strtrim.3.gz |
| sysutils/filevercmp |
biology/vcflib |
/usr/local/include/filevercmp.h |